{
  "_id": "6a13bc59acfb0bcc41d2c66a",
  "Package": "regnet",
  "Type": "Package",
  "Title": "Network-Based Regularization for Generalized Linear Models",
  "Version": "1.1.0",
  "Authors@R": "c(\nperson(given = \"Jie\", family = \"Ren\", role = c(\"aut\", \"cre\"),\nemail = \"renjie0910@gmail.com\"),\nperson(given = c(\"Luann\", \"C.\"), family = \"Jung\", role = \"aut\"),\nperson(given = \"Yinhao\", family = \"Du\", role = \"aut\"),\nperson(given = \"Cen\", family = \"Wu\", role = \"aut\"),\nperson(given = \"Yu\", family = \"Jiang\", role = \"aut\"),\nperson(given = \"Junhao\", family = \"Liu\", role = \"aut\"))",
  "Maintainer": "Jie Ren <renjie0910@gmail.com>",
  "Description": "Network-based regularization has achieved success in\nvariable selection for high-dimensional biological data due to\nits ability to incorporate correlations among genomic features.\nThis package provides procedures of network-based variable\nselection for generalized linear models (Ren et al. (2017)\n<doi:10.1186/s12863-017-0495-5> and Ren et al.(2019)\n<doi:10.1002/gepi.22194>). Continuous, binary, and survival\nresponse are supported. Robust network-based methods are\navailable for continuous and survival responses.",
  "License": "GPL-2",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "URL": "https://github.com/jrenstat/regnet",
  "BugReports": "https://github.com/jrenstat/regnet/issues",
  "Config/roxygen2/version": "8.0.0",
  "Config/pak/sysreqs": "libglpk-dev libxml2-dev",
  "Repository": "https://jrenstat.r-universe.dev",
  "Date/Publication": "2026-05-25 01:23:00 UTC",
  "RemoteUrl": "https://github.com/jrenstat/regnet",
  "RemoteRef": "HEAD",
  "RemoteSha": "4ff7a9f786f3afb709f8f40dc4c393e5c3363e21",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-25 02:58:03 UTC",
    "User": "root"
  },
  "Author": "Jie Ren [aut, cre],\nLuann C. Jung [aut],\nYinhao Du [aut],\nCen Wu [aut],\nYu Jiang [aut],\nJunhao Liu [aut]",
  "MD5sum": "bc85582acfdb956866a1676643ad5d6c",
  "_user": "jrenstat",
  "_type": "src",
  "_file": "regnet_1.1.0.tar.gz",
  "_fileid": "6752ad5f9dc887e80f1ac384dd8c9c2cb5cfcd487659b7aa028f643434ee9c28",
  "_filesize": 2670692,
  "_sha256": "6752ad5f9dc887e80f1ac384dd8c9c2cb5cfcd487659b7aa028f643434ee9c28",
  "_created": "2026-05-25T02:58:03.000Z",
  "_published": "2026-05-25T03:04:57.644Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77649637223,
      "time": 198,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7190877987"
    },
    {
      "job": 77649637250,
      "time": 180,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7190875545"
    },
    {
      "job": 77649637239,
      "time": 186,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7190876267"
    },
    {
      "job": 77649637221,
      "time": 203,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7190878649"
    },
    {
      "job": 77649637255,
      "time": 115,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7190866006"
    },
    {
      "job": 77649637245,
      "time": 242,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7190884166"
    },
    {
      "job": 77649637256,
      "time": 99,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7190863713"
    },
    {
      "job": 77649637246,
      "time": 324,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7190896202"
    },
    {
      "job": 77649342101,
      "time": 252,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7190850046"
    },
    {
      "job": 77649637210,
      "time": 149,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7190871102"
    },
    {
      "job": 77649637227,
      "time": 207,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7190879254"
    },
    {
      "job": 77649637220,
      "time": 171,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7190874208"
    },
    {
      "job": 77649637222,
      "time": 199,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7190878071"
    }
  ],
  "_buildurl": "https://github.com/r-universe/jrenstat/actions/runs/26380746920",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/jrenstat/regnet",
  "_commit": {
    "id": "4ff7a9f786f3afb709f8f40dc4c393e5c3363e21",
    "author": "Jie Ren <renjie0910@gmail.com>",
    "committer": "Jie Ren <renjie0910@gmail.com>",
    "message": "Optimize C++ grid search and stabilize logistic sigmoid\n",
    "time": 1779672180
  },
  "_maintainer": {
    "name": "Jie Ren",
    "email": "renjie0910@gmail.com",
    "login": "jrenstat",
    "description": "PhD in Statistics",
    "uuid": 8022299
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0.0",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "RcppArmadillo",
      "role": "LinkingTo"
    },
    {
      "package": "glmnet",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "igraph",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "covr",
      "role": "Suggests"
    }
  ],
  "_owner": "jrenstat",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-21",
      "n": 3
    },
    {
      "week": "2026-22",
      "n": 1
    }
  ],
  "_tags": [],
  "_topics": [
    "cancer-prognosis",
    "logistic-regression",
    "network",
    "penalized-regression",
    "regularization",
    "survival",
    "openblas",
    "cpp",
    "openmp"
  ],
  "_stars": 4,
  "_contributors": [
    {
      "user": "jrenstat",
      "count": 3,
      "uuid": 8022299
    },
    {
      "user": "lollyluann",
      "count": 1,
      "uuid": 1776794
    }
  ],
  "_userbio": {
    "uuid": 8022299,
    "type": "user",
    "name": "Jie Ren",
    "description": "PhD in Statistics"
  },
  "_downloads": {
    "count": 246,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/regnet"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/jrenstat/regnet",
  "_searchresults": 8,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/regnet.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/jrenstat/regnet",
  "_realowner": "jrenstat",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2017-05-21"
    },
    {
      "version": "0.1.1",
      "date": "2017-05-23"
    },
    {
      "version": "0.2.0",
      "date": "2017-10-15"
    },
    {
      "version": "0.3.0",
      "date": "2018-05-22"
    },
    {
      "version": "0.4.0",
      "date": "2019-06-08"
    },
    {
      "version": "1.0.0",
      "date": "2022-08-18"
    },
    {
      "version": "1.0.1",
      "date": "2024-02-22"
    },
    {
      "version": "1.0.2",
      "date": "2025-02-10"
    }
  ],
  "_exports": [
    "cv.regnet",
    "regnet"
  ],
  "_datasets": [
    {
      "name": "rgn.htr",
      "title": "Example datasets for demonstrating the features of regnet",
      "object": "HeteroExample",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "rgn.logi",
      "title": "Example datasets for demonstrating the features of regnet",
      "object": "LogisticExample",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "rgn.surv",
      "title": "Example datasets for demonstrating the features of regnet",
      "object": "SurvExample",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "rgn.tcga",
      "title": "Example datasets for demonstrating the features of regnet",
      "object": "ContExample",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "regnet-package",
      "title": "regnet: Network-Based Regularization for Generalized Linear Models",
      "topics": [
        "regnet-package"
      ]
    },
    {
      "page": "cv.regnet",
      "title": "k-folds cross-validation for regnet",
      "topics": [
        "cv.regnet"
      ]
    },
    {
      "page": "plot.regnet",
      "title": "plot a regnet object",
      "topics": [
        "plot.regnet"
      ]
    },
    {
      "page": "print.cv.regnet",
      "title": "print a cv.regnet object",
      "topics": [
        "print.cv.regnet"
      ]
    },
    {
      "page": "print.regnet",
      "title": "print a regnet object",
      "topics": [
        "print.regnet"
      ]
    },
    {
      "page": "regnet",
      "title": "fit a regression for given lambda with network-based regularization",
      "topics": [
        "regnet",
        "regnet.default"
      ]
    },
    {
      "page": "regnet.cv.regnet",
      "title": "Fit a regnet model from cross-validation results",
      "topics": [
        "regnet.cv.regnet"
      ]
    },
    {
      "page": "rgn",
      "title": "Example datasets for demonstrating the features of regnet",
      "topics": [
        "rgn",
        "rgn.htr",
        "rgn.logi",
        "rgn.surv",
        "rgn.tcga"
      ]
    }
  ],
  "_readme": "https://github.com/jrenstat/regnet/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "codetools",
    "cpp11",
    "foreach",
    "glmnet",
    "glue",
    "igraph",
    "iterators",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "pkgconfig",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "rlang",
    "shape",
    "survival",
    "vctrs"
  ],
  "_sysdeps": [
    {
      "shlib": "liblapack",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libblas",
      "package": "libopenblas0-pthread",
      "source": "openblas",
      "version": "0.3.26+ds-1ubuntu0.1",
      "name": "openblas",
      "homepage": "https://www.openblas.net/",
      "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)"
    },
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_score": 3.6020599913279625,
  "_indexed": true,
  "_nocasepkg": "regnet",
  "_universes": [
    "jrenstat"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-05-25T03:01:11.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "4ff7a9f786f3afb709f8f40dc4c393e5c3363e21",
      "fileid": "29a3fbaef16c46dfb8e3f4c49db5858627bd1f01a87be4007cd7c387e8805038",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jrenstat/actions/runs/26380746920"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-05-25T03:01:05.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "4ff7a9f786f3afb709f8f40dc4c393e5c3363e21",
      "fileid": "9d26e3eb6fd7184da5d1c049733956f698c68f3457a5b4e42c26c2513bd44be9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jrenstat/actions/runs/26380746920"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-05-25T03:01:03.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "4ff7a9f786f3afb709f8f40dc4c393e5c3363e21",
      "fileid": "bd0840a4f60d196add9003b85284c83b1bdae5945fa3e44992f14dccdc88ea8d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jrenstat/actions/runs/26380746920"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.0",
      "date": "2026-05-25T03:01:25.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "4ff7a9f786f3afb709f8f40dc4c393e5c3363e21",
      "fileid": "8adf3805727b99fbbfd5317917613ba23282645edf79e66dcd598285ff2c55bf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jrenstat/actions/runs/26380746920"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-05-25T03:00:29.000Z",
      "arch": "aarch64",
      "commit": "4ff7a9f786f3afb709f8f40dc4c393e5c3363e21",
      "fileid": "ea7dc4a5fc2c54edf4043fc14af8d6608c8ba7c2199c2508fd76fdb99d60a8e9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jrenstat/actions/runs/26380746920"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-05-25T03:01:37.000Z",
      "arch": "x86_64",
      "commit": "4ff7a9f786f3afb709f8f40dc4c393e5c3363e21",
      "fileid": "12f0b09bec16378a97e5b488411653b725286ba2767dd6f7307376eb2a9dd941",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jrenstat/actions/runs/26380746920"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-05-25T03:00:16.000Z",
      "arch": "aarch64",
      "commit": "4ff7a9f786f3afb709f8f40dc4c393e5c3363e21",
      "fileid": "b5361feb13e412a931d343b05b02319089e9a90ea182e6d22f5b164ce9ae1013",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jrenstat/actions/runs/26380746920"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.1.0",
      "date": "2026-05-25T03:02:36.000Z",
      "arch": "x86_64",
      "commit": "4ff7a9f786f3afb709f8f40dc4c393e5c3363e21",
      "fileid": "3854983942eb8d1ee1f34a2a6ae73b98100b8a37b8644b4e21136be6b601ae51",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jrenstat/actions/runs/26380746920"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.0",
      "date": "2026-05-25T03:00:58.000Z",
      "arch": "emscripten",
      "commit": "4ff7a9f786f3afb709f8f40dc4c393e5c3363e21",
      "fileid": "c345d494db3a2c62417bba587d7ce62f943de3a921fb48ca48645aa9442687f0",
      "status": "success",
      "buildurl": "https://github.com/r-universe/jrenstat/actions/runs/26380746920"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-05-25T03:00:13.000Z",
      "arch": "x86_64",
      "commit": "4ff7a9f786f3afb709f8f40dc4c393e5c3363e21",
      "fileid": "fb720e3210fbb7827ebc161d78a7d56bd99ef6d789aa52ff02f756a674245900",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jrenstat/actions/runs/26380746920"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-05-25T03:00:15.000Z",
      "arch": "x86_64",
      "commit": "4ff7a9f786f3afb709f8f40dc4c393e5c3363e21",
      "fileid": "59db69c8b87358e959b0103aa9f0fdf2a641abb8a9733d04bdedaa672ad41a72",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jrenstat/actions/runs/26380746920"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.1.0",
      "date": "2026-05-25T03:00:19.000Z",
      "arch": "x86_64",
      "commit": "4ff7a9f786f3afb709f8f40dc4c393e5c3363e21",
      "fileid": "6ac5fed351839277b40e137f7601ced1972c7482f55faa2ffdadf576ab90dfc6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/jrenstat/actions/runs/26380746920"
    }
  ]
}